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1

Resolution of redundant semantic type assignments for organic chemicals in the UMLS

C. Paul Morrey, Ling Chen, Michael Halper, Yehoshua Perl

Journal:

Artificial Intelligence in Medicine

Year:

2011

Language:

english

File:

PDF, 342 KB

english, 2011

2

Efficient implementation of a shifting algorithm

Yehoshua Perl, Uzi Vishkin

Journal:

Discrete Applied Mathematics

Year:

1985

Language:

english

File:

PDF, 426 KB

english, 1985

3

A chemical specialty semantic network for the Unified Medical Language System

Morrey, C, Perl, Yehoshua, Halper, Michael, Chen, Ling, Gu, Huanying

Journal:

Journal of Cheminformatics

Year:

2012

Language:

english

File:

PDF, 320 KB

english, 2012

4

Auditing National Cancer Institute thesaurus neoplasm concepts in groups of high error concentration

Zheng, Ling, Min, Hua, Chen, Yan, Xu, Julia, Geller, James, Perl, Yehoshua

Journal:

Applied Ontology

Year:

2017

Language:

english

File:

PDF, 676 KB

english, 2017

5

The shifting algorithm technique for the partitioning of trees

Ronald I. Becker, Yehoshua Perl

Journal:

Discrete Applied Mathematics

Year:

1995

Language:

english

File:

PDF, 1.31 MB

english, 1995

6

The complexity of identifying redundant and essential elements

Shlomo Moran, Yehoshua Perl

Journal:

Journal of Algorithms

Year:

1981

Language:

english

File:

PDF, 511 KB

english, 1981

7

Computing access relevance for path-method generation in OODB and IM-OODB

Ashish Mehta, James Geller, Yehoshua Perl, Peter Fankhauser

Journal:

Journal of Intelligent Information Systems

Year:

1996

Language:

english

File:

PDF, 1.54 MB

english, 1996

8

A lexical metaschema for the UMLS semantic network

Li Zhang, Yehoshua Perl, Michael Halper, James Geller, George Hripcsak

Journal:

Artificial Intelligence in Medicine

Year:

2005

Language:

english

File:

PDF, 618 KB

english, 2005

9

A counter example to a conjecture of D. J. Rose on minimum triangulation

Journal:

Journal of Mathematical Analysis and Applications

Year:

1973

Language:

english

File:

PDF, 74 KB

english, 1973

10

Research on structural issues of the UMLS—past, present, and future

Yehoshua Perl, James Geller

Journal:

Journal of Biomedical Informatics

Year:

2003

Language:

english

File:

PDF, 94 KB

english, 2003

11

Modeling Multi-typed Structurally Viewed Chemicals with the UMLS Refined Semantic Network

Ling Chen, C. Paul Morrey, Huanying Gu, Michael Halper, Yehoshua Perl

Journal:

Journal of the American Medical Informatics Association

Year:

2009

Language:

english

File:

PDF, 1.79 MB

english, 2009

12

A review of auditing techniques for the Unified Medical Language System

Zheng, Ling, He, Zhe, Wei, Duo, Keloth, Vipina, Fan, Jung-Wei, Lindemann, Luke, Zhu, Xinxin, Cimino, James J, Perl, Yehoshua

Journal:

Journal of the American Medical Informatics Association

Year:

2020

File:

PDF, 1.30 MB

2020

13

Structural group-based auditing of missing hierarchical relationships in UMLS

Yan Chen, Huanying (Helen) Gu, Yehoshua Perl, James Geller

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 653 KB

english, 2009

14

Designing metaschemas for the UMLS enriched semantic network

Li Zhang, Yehoshua Perl, Michael Halper, James Geller

Journal:

Journal of Biomedical Informatics

Year:

2003

Language:

english

File:

PDF, 402 KB

english, 2003

15

A study of terminology auditors’ performance for UMLS semantic type assignments

Huanying (Helen) Gu, Gai Elhanan, Yehoshua Perl, George Hripcsak, James J. Cimino, Julia Xu, Yan Chen, James Geller, C. Paul Morrey

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 369 KB

english, 2012

16

Quality Assurance of Biomedical Terminologies and Ontologies

Geller, James, Cui, Licong, Ochs, Christopher, Zhang, G.Q., Perl, Yehoshua

Journal:

Journal of Biomedical Informatics

Year:

2017

Language:

english

File:

PDF, 199 KB

english, 2017

17

The New Class of g-Chain Periodic Sorters

Ronald I Becker, David Nassimi, Yehoshua Perl

Journal:

Journal of Parallel and Distributed Computing

Year:

1998

Language:

english

File:

PDF, 656 KB

english, 1998

18

Better understanding of batcher's merging networks

Journal:

Discrete Applied Mathematics

Year:

1989

Language:

english

File:

PDF, 1005 KB

english, 1989

19

[ACM Press the second international conference - Washington, D.C., United States (1993.11.01-1993.11.05)] Proceedings of the second international conference on Information and knowledge management - CIKM '93 - The OODB path-method generator (PMG) using precomputed access relevance

Mehta, Ashish, Geller, James, Perl, Yehoshua, Neuhold, Erich

Year:

1993

Language:

english

File:

PDF, 1.07 MB

english, 1993

20

[IEEE 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Kansas City, MO (2017.11.13-2017.11.16)] 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Auditing the assignments of top-level semantic types in the UMLS semantic network to UMLS concepts

He, Zhe, Perl, Yehoshua, Elhanan, Gai, Chen, Yan, Geller, James, Bian, Jiang

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

21

Auditing concept categorizations in the UMLS

Huanying (Helen) Gu, Yehoshua Perl, Gai Elhanan, Hua Min, Li Zhang, Yi Peng

Journal:

Artificial Intelligence in Medicine

Year:

2004

Language:

english

File:

PDF, 196 KB

english, 2004

22

Using WordNet synonym substitution to enhance UMLS source integration

Kuo-Chuan Huang, James Geller, Michael Halper, Yehoshua Perl, Junchuan Xu

Journal:

Artificial Intelligence in Medicine

Year:

2009

Language:

english

File:

PDF, 429 KB

english, 2009

23

Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network

Ochs, Christopher, Perl, Yehoshua, Geller, James, Haendel, Melissa, Brush, Matthew, Arabandi, Sivaram, Tu, Samson

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 6.75 MB

english, 2015

24

An OODB part-whole model: Semantics, notation and implementation

Michael Halper, James Geller, Yehoshua Perl

Journal:

Data & Knowledge Engineering

Year:

1998

Language:

english

File:

PDF, 2.23 MB

english, 1998

25

The OODB path-method generator (PMG) using access weights and precomputed access relevance

Ashish Mehta, James Geller, Yehoshua Perl, Erich Neuhold

Journal:

The VLDB Journal

Year:

1998

Language:

english

File:

PDF, 259 KB

english, 1998

26

The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network

Yehoshua Perl, Zong Chen, Michael Halper, James Geller, Li Zhang, Yi Peng

Journal:

Journal of Biomedical Informatics

Year:

2002

Language:

english

File:

PDF, 423 KB

english, 2002

27

[IEEE 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Madrid, Spain (2018.12.3-2018.12.6)] 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Quality Assurance of Concept Roles in the National Cancer Institute thesaurus

Zheng, Ling, Chen, Yan, Perl, Yehoshua, Halper, Michael, Geller, James, de Coronado, Sherri

Year:

2018

Language:

english

File:

PDF, 195 KB

english, 2018

28

Structural measures to track the evolution of SNOMED CT hierarchies

Wei, Duo, (Helen) Gu, Huanying, Perl, Yehoshua, Halper, Michael, Ochs, Christopher, Elhanan, Gai, Chen, Yan

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 992 KB

english, 2015

29

Source authenticity in the UMLS – A case study of the Minimal Standard Terminology

Gai Elhanan, Kuo-Chuan Huang, Yehoshua Perl

Journal:

Journal of Biomedical Informatics

Year:

2010

Language:

english

File:

PDF, 886 KB

english, 2010

30

[ACM Press the fifth international conference - Rockville, Maryland, United States (1996.11.12-1996.11.16)] Proceedings of the fifth international conference on Information and knowledge management - CIKM '96 - Modeling a vocabulary in an object-oriented database

Liu, Li-min, Halper, Michael, Gu, Huanying, Geller, James, Perl, Yehoshua

Year:

1996

Language:

english

File:

PDF, 981 KB

english, 1996

31

From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies

Elhanan, Gai, Ochs, Christopher, Mejino, Jose L.V., Liu, Hao, Mungall, Christopher J., Perl, Yehoshua

Journal:

Artificial Intelligence in Medicine

Year:

2017

Language:

english

File:

PDF, 990 KB

english, 2017

32

Concept placement using BERT trained by transforming and summarizing biomedical ontology structure

Liu, Hao, Perl, Yehoshua, Geller, James

Journal:

Journal of Biomedical Informatics

Year:

2020

File:

PDF, 5.84 MB

2020

33

Enhancing OODB semantics to support browsing in an OODB vocabulary representation

Li-min Liu, James Geller, Yehoshua Perl

Journal:

Concurrency and Computation: Practice and Experience

Year:

2003

Language:

english

File:

PDF, 310 KB

english, 2003

34

A shifting algorithm for constrained min-max partition on trees

Eliezer Agasi, Ronald I. Becker, Yehoshua Perl

Journal:

Discrete Applied Mathematics

Year:

1993

Language:

english

File:

PDF, 1.77 MB

english, 1993

35

An enriched unified medical language system semantic network with a multiple subsumption hierarchy

Li Zhang, Yehoshua Perl, Michael Halper, James Geller, James J Cimino

Journal:

Journal of the American Medical Informatics Association

Year:

2004

Language:

english

File:

PDF, 314 KB

english, 2004

36

A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies

Ochs, Christopher, Geller, James, Perl, Yehoshua, Musen, Mark A.

Journal:

Journal of Biomedical Informatics

Year:

2016

Language:

english

File:

PDF, 3.19 MB

english, 2016

37

Quality assurance of biomedical terminologies and ontologies

Geller, James, Perl, Yehoshua, Cui, Licong, Zhang, G.Q.

Journal:

Journal of Biomedical Informatics

Year:

2018

Language:

english

File:

PDF, 186 KB

english, 2018

38

Frameworks for incorporating semantic relationships into object-oriented database systems

Michael Halper, Li-min Liu, James Geller, Yehoshua Perl

Journal:

Concurrency and Computation: Practice and Experience

Year:

2003

Language:

english

File:

PDF, 294 KB

english, 2003

39

Semantic refinement and error correction in large terminological knowledge bases

James Geller, Huanying Gu, Yehoshua Perl, Michael Halper

Journal:

Data & Knowledge Engineering

Year:

2003

Language:

english

File:

PDF, 674 KB

english, 2003

40

Interpolation search---a log logN search

Perl, Yehoshua, Itai, Alon, Avni, Haim

Journal:

Communications of the ACM

Year:

1978

Language:

english

File:

PDF, 338 KB

english, 1978

41

Quality assurance of complex ChEBI concepts based on number of relationship types

Yumak, Hasan, Zheng, Ling, Chen, Ling, Halper, Michael, Perl, Yehoshua, Owen, Gareth

Journal:

Applied Ontology

Year:

2019

Language:

english

File:

PDF, 298 KB

english, 2019

42

Generalized fibonacci maximum path graphs

Martin Charles Golumbic, Yehoshua Perl

Journal:

Discrete Mathematics

Year:

1979

Language:

english

File:

PDF, 723 KB

english, 1979

43

Most uniform path partitioning and its use in image processing

Mario Lucertini, Yehoshua Perl, Bruno Simeone

Journal:

Discrete Applied Mathematics

Year:

1993

Language:

english

File:

PDF, 2.03 MB

english, 1993

44

Structural schema integration with full and partial correspondence using the dual model

James Geller, Yehoshua Perl, Erich Neuhold, Amit Sheth

Journal:

Information Systems

Year:

1992

Language:

english

File:

PDF, 2.05 MB

english, 1992

45

Finding the two-core of a tree

Ronald I. Becker, Yehoshua Perl

Journal:

Discrete Applied Mathematics

Year:

1985

Language:

english

File:

PDF, 490 KB

english, 1985

46

Automated comparative auditing of NCIT genomic roles using NCBI

Barry Cohen, Marc Oren, Hua Min, Yehoshua Perl, Michael Halper

Journal:

Journal of Biomedical Informatics

Year:

2008

Language:

english

File:

PDF, 228 KB

english, 2008

47

A methodology for partitioning a vocabulary hierarchy into trees

Huanying (Helen) Gu, Yehoshua Perl, James Geller, Michael Halper, Mansnimar Singh

Journal:

Artificial Intelligence in Medicine

Year:

1999

Language:

english

File:

PDF, 400 KB

english, 1999

48

Efficient Optimization of Monotonic Functions on Trees

Perl, Yehoshua, Shiloach, Yossi

Journal:

SIAM Journal on Algebraic and Discrete Methods

Year:

1983

Language:

english

File:

PDF, 615 KB

english, 1983

49

The periodic balanced sorting network

Dowd, Martin, Perl, Yehoshua, Rudolph, Larry, Saks, Michael

Journal:

Journal of the ACM

Year:

1989

Language:

english

File:

PDF, 1.34 MB

english, 1989

50

A contextual auditing method for SNOMED CT concepts

Agrawal, Ankur, Perl, Yehoshua, Ochs, Christopher, Elhanan, Gai

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2016

File:

PDF, 1.01 MB

2016

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

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